The following public-domain tools can be useful for more detailed analysis, visualization, and modeling of neurons and their morphology.

Main Tools

• Center for Neural Informatics, Structure, and Plasticity
• Cvapp   [visualization of digital reconstructions]
• L-Measure   [online neuromorphometric analysis]
• MRALD   [server application for internet databasing]
• NeuroConstruct
• NeuroMorpho database schema
• Neuromantic   [Freeware Tool for Neuronal Reconstruction]
• Neuroscience Information Framework

Repositories of neuronal reconstructions mirrored into NeuroMorpho.Org

• Borst Cells
• Cell-Centered Database
• Claiborne Cells
• Cricket Cercal System Database
• Destexhe Cells
• Duke/Southampton Archive
• Dendritica
• Flybrain@Stanford
• Gulyas archive/Freund Lab
• Spruston cells
• Wearne/Hof Cells
• Yuste Cells

Other useful Links

• Allen Institute for Brain Science
• Diadem Challenge
• George Mason University
• Genesis   [general purpose simulation platform]
• Krasnow Institute for Advanced Study
• MITRE's Neuroinformatics
• ModelDB
• Neuro ML
• Neurolucida
• Neurogateway.org
• Neuronland
• NTS (The Eutectic Neuron Tracing System)
• Neuron   [compartmental modeling and simulation]
• Neuron_morpho plugin   [3D reconstruction from image stacks]
• NeuronStudio   [3D reconstruction from confocal and multi-photon images]
• SfN Neuroscience Database Gateway
• V3D  [Image visualization & analysis]